[{"_1":2,"_155":-5,"_156":-5},"loaderData",{"_3":4,"_13":14,"_21":22,"_134":135},"root",{"_5":-5,"_6":-7,"_7":8,"_9":-7,"_10":11,"_12":-7},"currentUser","primaryEmail","siteVerification","6LeIxAcTAAAAAJcZVRqyHh71UMIEGNQ_MXjiZKhI","toast","enableDev",false,"incidentStatus","routes/_layout",{"_15":-5,"_16":17,"_18":17,"_19":11,"_20":11},"username","isAskGordonEnabled",true,"isUsingNewTemplate","showMinimalLanding","showHoneypotTrap","routes/_layout.r.$namespace.$reponame",{"_23":24,"_25":-5,"_26":11,"_27":11,"_28":29,"_30":31,"_32":-5,"_33":11,"_34":35,"_84":-5,"_85":86,"_125":-5,"_126":11,"_127":17,"_128":11,"_129":-5,"_130":11,"_131":-5,"_132":133},"canonicalUrl","https://hub.docker.com/r/henrikbengtsson/r-parallel/tags","mcpServer","canSeeDockerfile","canSeeAutobuilds","namespace","henrikbengtsson","reponame","r-parallel","cloudBuildSource","isAutobuildsAvailable","repo",{"_36":37,"_38":39,"_41":42,"_43":44,"_45":11,"_46":47,"_48":49,"_50":51,"_53":31,"_28":29,"_54":55,"_56":40,"_57":58,"_59":60,"_61":62,"_63":-5,"_64":58,"_65":66,"_67":11,"_68":29,"_69":70,"_75":11,"_76":77,"_81":29,"_82":83},"categories",[],"content_types",[40],"image","date_registered","2019-02-12T17:26:39.180737Z","description","[DEPRECATED] A Docker container with base R + several parallel/asynchronous packages","is_private","last_updated","2019-03-07T03:26:27.337348Z","last_modified","2024-10-16T13:48:34.145251Z","media_types",[52],"application/vnd.docker.container.image.v1+json","name","pull_count",22973,"repository_type","star_count",0,"status",1,"status_description","active","source","collaborator_count","full_description","# 📣 We've moved to rocker/r-parallel\n\n2019-03-25: Please use instead. This repository is now deprecated and will no longer be maintained.\n\n---\n\n# r-parallel\n\nThis is a Docker-based Linux container that consists of the base [R] installation, by extending the [rocker/r-base] container, together with several system libraries and R packages useful for parallel/asynchronous processing.\n\n\n## Build\n\nTo build the container locally, do:\n\n```sh\n$ docker build . --tag henrikbengtsson/r-parallel\nSending build context to Docker daemon 56.32kB\nStep 1/17 : FROM rocker/r-base\nlatest: Pulling from rocker/r-base\n28507814f909: Pull complete \n8205b68cfb04: Pull complete \nbbf1b2b5c36c: Pull complete \n6fc27852fced: Pull complete \n8cdff7e970c4: Pull complete \ne81d795a3e2b: Downloading ...\n[...]\n\n$ \n```\n\nTo pull it down from Docker Hub, do:\n\n```sh\n$ docker pull henrikbengtsson/r-parallel\nUsing default tag: latest\nlatest: Pulling from henrikbengtsson/r-parallel\n[...]\n\n$ \n```\n\n\n## Usage\n\n### Standalone\n\nTo launch R by itself, do:\n\n```sh\n$ docker run -ti henrikbengtsson/r-parallel\n\nR version 3.5.1 (2018-07-02) -- \"Feather Spray\"\nCopyright (C) 2018 The R Foundation for Statistical Computing\nPlatform: x86_64-pc-linux-gnu (64-bit)\n\nR is free software and comes with ABSOLUTELY NO WARRANTY.\nYou are welcome to redistribute it under certain conditions.\nType 'license()' or 'licence()' for distribution details.\n\n Natural language support but running in an English locale\n\nR is a collaborative project with many contributors.\nType 'contributors()' for more information and\n'citation()' on how to cite R or R packages in publications.\n\nType 'demo()' for some demos, 'help()' for on-line help, or\n'help.start()' for an HTML browser interface to help.\nType 'q()' to quit R.\n\n> y <- sapply(1:3, FUN = function(x) sqrt(x))\n> y\n[1] 1.000000 1.414214 1.732051\n\n> library(parallel)\n> y <- mclapply(1:3, FUN = function(x) sqrt(x))\n> y <- Reduce(c, y)\n> y\n[1] 1.000000 1.414214 1.732051\n\n> cl <- makeCluster(future::availableCores())\n> y <- parSapply(cl, X = 1:3, FUN = function(x) sqrt(x))\n> y\n[1] 1.000000 1.414214 1.732051\n> stopCluster(cl)\n\n> library(future.apply)\n> plan(multiprocess)\n> y <- future_sapply(1:3, FUN = function(x) sqrt(x))\n> y\n[1] 1.000000 1.414214 1.732051\n\n> library(foreach)\n> doFuture::registerDoFuture()\n> y <- foreach(x = 1:3, .combine = c) %dopar% sqrt(x)\n> y\n[1] 1.000000 1.414214 1.732051\n\n> quit(\"no\")\n\n$ \n```\n\n\n### As R Background Workers\n\nTo launch a parallel cluster consisting of two R workers that are running in their own [Docker] container, _from the R installation installed on the host system_, do:\n\n```r\n$ R --quiet\n\n> library(parallel)\n> cl <- future::makeClusterPSOCK(rep(\"localhost\", times = 2L), rscript = c(\n \"docker\", \"run\", \"--net=host\", \"henrikbengtsson/r-parallel\", \"Rscript\"\n ))\n> print(cl)\nsocket cluster with 2 nodes on host ‘localhost’\n\n> y <- parSapply(cl, 1:3, function(x) sqrt(x))\n> y\n[1] 1.000000 1.414214 1.732051\n\n> stopCluster(cl)\n```\n\nTo do the same using [Singularity], do:\n\n```r\n> library(parallel)\n> cl <- future::makeClusterPSOCK(rep(\"localhost\", times = 2L), rscript = c(\n \"singularity\", \"exec\", \"docker://henrikbengtsson/r-parallel\", \"Rscript\"\n ))\n> print(cl)\nsocket cluster with 2 nodes on host ‘localhost’\n\n> y <- parSapply(cl, 1:3, function(x) sqrt(x))\n> y\n[1] 1.000000 1.414214 1.732051\n\n> stopCluster(cl)\n```\n\n[R]: https://www.r-project.org/\n[Docker]: https://www.docker.com/\n[Singularity]: https://www.sylabs.io/singularity/\n[rocker/r-base]: https://hub.docker.com/r/rocker/r-base/\n","has_starred","hub_user","immutable_tags_settings",{"_71":11,"_72":73},"enabled","rules",[74],".*","is_automated","permissions",{"_78":17,"_79":11,"_80":11},"read","write","admin","user","storage_size",440828261,"orgData","recentTags",[87],{"_88":40,"_89":90,"_91":92,"_93":94,"_95":96,"_46":114,"_115":90,"_116":29,"_117":52,"_53":118,"_119":120,"_121":105,"_122":114,"_123":62,"_124":17},"content_type","creator",299440,"full_size",440815637,"id",46731205,"images",[97],{"_98":99,"_100":101,"_102":103,"_104":105,"_106":107,"_108":109,"_110":103,"_111":-5,"_112":92,"_59":62,"_113":-5},"architecture","amd64","digest","sha256:e438ee7253f03e6f96bd19fd4ed6f929b6938853ecae80e0079beca0afa7fb85","features","","last_pulled","2026-09-22T05:03:20.877639825Z","last_pushed","2019-02-12T18:09:46Z","os","linux","os_features","os_version","size","variant","2019-03-07T03:26:26.998231Z","last_updater","last_updater_username","media_type","latest","repository",6679733,"tag_last_pulled","tag_last_pushed","tag_status","v2","sbxKitMetadata","isPotentialSpam","isHubSbxKitsEnabled","showSbxLogoOverride","sbxTrademarkText","displaySecurityMetadata","tagAttestations","tagsHaveAttestations",[],"routes/_layout.r.$namespace.$reponame.tags",{"_34":136,"_143":144,"_132":153,"_154":11},{"_36":137,"_38":138,"_41":42,"_43":44,"_45":11,"_46":47,"_48":49,"_50":139,"_53":31,"_28":29,"_54":55,"_56":40,"_57":58,"_59":60,"_61":62,"_63":-5,"_64":58,"_65":66,"_67":11,"_68":29,"_69":140,"_75":11,"_76":142,"_81":29,"_82":83},[],[40],[52],{"_71":11,"_72":141},[74],{"_78":17,"_79":11,"_80":11},"tags",{"_145":60,"_146":-5,"_147":-5,"_148":149},"count","next","previous","results",[150],{"_88":40,"_89":90,"_91":92,"_93":94,"_95":151,"_46":114,"_115":90,"_116":29,"_117":52,"_53":118,"_119":120,"_121":105,"_122":114,"_123":62,"_124":17},[152],{"_98":99,"_100":101,"_102":103,"_104":105,"_106":107,"_108":109,"_110":103,"_111":-5,"_112":92,"_59":62,"_113":-5},[],"canDeleteTags","actionData","errors"]

henrikbengtsson/r-parallel

Tags for henrikbengtsson/r-parallel