ohdsi/deep_plp repository overview

This image has the DeepPatientLevelPrediction R package as well as all it's dependencies, including pytorch and cuda. To use with GPUs you need either the nvidia container toolkit⁠(for docker) or nvidia container device interface⁠ (for podman). The image includes rstudio server. To use with GPUs you can run:

docker run -it --runtime=nvidia --gpus all -v /host/project/dir:/project/ -e PASSWORD=<my_password> -p 8787:8787 ohdsi/deep_plp:latest

Then in a browser you can open localhost:8787 to access rstudio with the user rstudio and password <my_password>. Please refer to the rocker rstudio documentation⁠ for more information.

If you have any issues feel free to post an issue in the DeepPatientLevelPrediction github repo⁠.