Broad Institute of MIT and Harvard

Official repository for nightly development builds of the GATK

Workflow management system supporting the WDL language on multiple platform backends

Downloads DRS files on task VMs

IAM addon for Cromwell

Command-line utility for WDL

Official release repository for GATK versions 4.x

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

It's a methods repository!

Google CloudSQL proxy with modified entrypoint script

GTEx RNA-seq pipeline: alignment (STAR), QC (RNA-SeQC), expression quantification (RSEM & RNA-SeQC)

Images for programs and libraries used my LoamStream for processing genetic data.

firecloud-ui docker container

A simple service to store arbitrary key/value pairs

DSDE Toolbox Docker container

Metadata server for GP Pipelines

GTEx Consortium: eQTL pipeline based on FastQTL

Orch integration tests

firecloud-orchestration container